Publikacje - Department of Plant Biotechnology - Faculty of Biochemistry, Biophysics and Biotechnology

Research papers

2023

Zubik-Duda M, Luchowski R, Maksim M, Nosalewicz A, Zgłobicki P, Banaś AK, Grudzinski W, Gruszecki WI. The photoprotective dilemma of a chloroplast: to avoid high light or to quench the fire? Plant Journal (2023), 115(1):7-17

Gallinari RH, Lyczakowski JJ, Llerena JPP, Mayer JLS, Rabelo SC, Menossi, M, Dupree P, Araujo P. Silencing ScGUX2 reduces xylan glucuronidation and improves biomass saccharification in sugarcane. Plant Biotechnology Journal (2023)

Krzeszowiec W, Lewandowska A, Lyczakowski JJ, Bebko K, Scholz SS, Gabryś H. Two types of GLR channels cooperate differently in light and dark growth of Arabidopsis seedlings. BMC Plant Biology (2023), 23, 358.

Bourdon M, Lyczakowski JJ, Cresswell R, Amsbury S, Vilaplana F, Le Guen MJ, Follain N, Wightman R, Su C, Alatorre-Cobos F, Ritter M, Liszka A, Terrett OM, Yadav SR, Vaten A, Nieminen K, Eswaran G, Alonso-Serra J, Muller KH, Iuga D, Miskolczi PC, Kolmbach L, Otero S, Mahonen AP, Bhalerao R, Bulone V, Mansfield SD, Hill S, Beaugrand I, Benitez-Alfonso Y, Dupree R, Dupree P, Helariutta Y. Ectopic callose deposition into woody biomass modulates the nano-architecture of macrofibrils. Nature Plants (2023), 9, 1530-1546.

Liszka A, Wightman R, Latowski D, Bourdon M, Krogh KBRM, Pietrzykowski M, Lyczakowski JJ. Structural differences of cell walls in earlywood and latewood of Pinus sylvestris and their contribution to biomass recalcitrance. Frontiers in Plant Science (2023) 14, 1283093.

Arciszewska K, Kowalska E, Bartnicki F, Bonarek P, Banaś A K and Strzałka W. DNA aptamer-based affinity chromatography system for purification of recombinant proteins tagged with lysine tag. Journal of Chromatography A (2023), 1692, 463846.

2022

Temple H, Phyo P, Yang W, Lyczakowski JJ, Echevarría-Poza A, Yakunin I, Parra-Rojas JP, Terrett OM, Saez-Aguayo S, Dupree R, Orellana A, Hong M and Dupree P. Golgi-localized putative S-adenosyl methionine transporters required for plant cell wall polysaccharide methylation. Nature Plants (2022) 8, 656–669.

Yu L, Yoshimi Y, Cresswell R, Wightman R, Lyczakowski JJ, Wilson LFL, Ishida K, Stott K, Yu X, Charalambous S, Wurman-Rodrich J, Terrett OM, Brown SP, Dupree R, Temple H, Krogh KBRM and Dupree P. Eudicot primary cell wall glucomannan is related in synthesis, structure, and function to xyloglucan. The Plant Cell (2022) koac238.

Krzeszowiec-Jeleń, W. (2022). Jakość w kształceniu laboratoryjnym : przypadek nauk przyrodniczych. In J. Bugaj & M. Budzanowska-Drzewiecka (Eds.), Jakość kształcenia akademickiego (pp. 141–160). Wydawnictwo Uniwersytetu Jagiellońskiego.

Hebda A, Liszka A, Lewandowska A. Łyczakowski JJ, Gabryś H and Krzeszowiec-Jeleń W. Upregulation of GLRs expression by light in Arabidopsis leaves. BMC Plant Biol 22, 197 (2022)

Jedynak P, Trzebuniak KF, Chowaniec M, Zgłobicki P, Banas AK and Mysliwa-Kurdziel B. Dynamics of etiolation monitored by seedling morphology, carotenoid composition, antioxidant level, and photoactivity of protochlorophyllide in Arabidopsis thaliana. Frontiers in Plant Science (2022) 12:772727

2021

Hebda A, Liszka A, Zgłobicki P, Nawrot-Chorabik K and Lyczakowski JJ. Transformation of European Ash (Fraxinus excelsior L.) Callus as a Starting Point for Understanding the Molecular Basis of Ash Dieback. Plants 2021, 10(11), 2524

Duan P, Kaser SJ, Lyczakowski JJ, Phyo P, Tryfona T, Dupree P* and Hong M. Xylan Structure and Dynamics in Native Brachypodium Grass Cell Walls Investigated by Solid-State NMR Spectroscopy. ACS Omega (2021) 6, 23, 15460–15471;

Lyczakowski JJ, Yu L, Terrett OM, Fleischmann C, Temple H, Thorlby G, Sorieul M and Dupree P. Two conifer GUX clades are responsible for distinct glucuronic acid patterns on xylan. New Phytologist (2021) 231: 1720–1733doi: 10.1111/nph.17531

Eckstein A, Grzyb J, Hermanowicz P, Zgłobicki P, Łabuz J, Strzałka W, Dziga D, Banaś AK. Arabidopsis phototropins participate in the regulation of dark-induced leaf senescence. International Journal of Molecular Sciences (2021), 22(4), 1836;

Łabuz J, Sztatelman O, Jagiełło-Flasińska D, Hermanowicz P, Bażant A, Banaś AK, F, Giza A, Kozłowska A, Lasok H, Sitkiewicz E, Krzeszowiec W, Gabryś H, Strzałka W. Phototropin interactions with SUMO proteins. Plant and Cell Physiology, (2021) 62 (4), 693–707

2020

Banaś AK, Zgłobicki P, Kowalska E, Bażant A, Dziga D, Strzałka W. All You Need Is Light. Photorepair of UV-Induced Pyrimidine Dimers. Genes (Basel). (2020) 11(11):1304.

Strzałka W, Zgłobicki P, Kowalska E, Bażant A, Dziga D, Banaś AK. The Dark Side of UV-Induced DNA Lesion Repair. Genes (Basel). (2020) 11(12):1450.

Kowalska E, Strzalka W, Takuji O 2020 A crystallization and preliminary X-ray diffraction study of the Arabidopsis thaliana proliferating cell nuclear antigen (PCNA2) alone and in complex with a PIP-box peptide from Flap endonuclease 1. Acta Biochimica Polonica Vol 67(1): 49-52

Antosiak A, Tokodi N, Maziarz R, Kokociński M, Brzozowska A, Strzałka W, Banaś A.K, Willis A, Dziga D 2020 Different gene expression response of polish and australian Raphidiopsis raciborskii strains to the chill/light Stress. Applied Science 10, 5437

Kuczyńska P, Jemioła-Rzemińska M, Nowicka B, Jakubowska A, Strzałka W, Burda K, Strzałka K 2020 The xanthophyll cycle in diatom Phaeodactylum tricornutum in response to light stress. Plant Physiology and Biochemistry 152: 125-137

Krzeszowiec W, Novokreshchenova M, Gabryś H 2020 Chloroplasts in C3 grasses move in response to blue-light. Plant Cell Reports

Stępniewska H, Błońska E, Kwasowski W, Słodczyk Z, Gałka D, Hebda A 2020 Fungal abundance and diversity as influenced by properties of Technosols developed from mine wastes containing iron sulphides: A case study from abandoned iron sulphide and uranium mine in Rudki, south-central Poland. Applied Soil Ecology 145:103349

2019

Brown P, RELISH Consortium and Zhou Y 2019 Large expert-curated database for benchmarking document similarity detection in biomedical literature search Database Volume 2019, 2019, 1-66,

Dziga D, Tokodi N, Drobac D, Kokocinski M, Antosiak A, Puchalski J, Strzałka W, Madej M, Svirˇcev Z and Meriluoto J 2019 The Effect of a Combined Hydrogen Peroxide-MlrA Treatment on the Phytoplankton Community and Microcystin Concentrations in a Mesocosm Experiment in Lake Ludoš Toxins 11, 725;

Eckstein A, Grzyb J, Hermanowicz P, Łabuz J, Banaś AK 2019 A role for GLABRA1 in dark-induced senescence. Acta Biochimica Polonica 66(3): 243–248,

Dziga D, Kokociński M, Barylski J, Nowicki G, Maksylewicz A, Antosiak A, Banaś AK, Strzałka W 2019 Correlation between specific groups of heterotrophic bacteria and microcystin biodegradation in freshwater bodies of central Europe, FEMS Microbiology Ecology 95(11),

Hermanowicz P, Banaś AK, Sztatelman O, Gabryś H, Łabuz J 2019 UV-B induces chloroplast movements in a phototropin-dependent manner. Frontiers in Plant Science

Olchawa-Pajor M, Bojko M, Strzałka W, Strzałka K, Latowski D 2019 Violaxanthin conversion by recombinant diatom and plant de-epoxidases, expressed in Escherichia coli – comparative analysis. Acta Biochimica Polonica 66(3): 249-255,

Hebda A, Wachowiak W 2019 Heterogeneous patterns of genetic variation at nuclear genes and quantitative traits in Scots pine provenance trial. Acta Societatis Botanicorum Poloniae 88(2):3623,

Robson TM, Aphalo PJ, Banaś AK, Barnes PW, Brelsford CC, Jenkins GI, Kotilainen TK, Łabuz J, Martínez-Abaigar J, Morales LO, Neugart S, Pieristè M, Rai N, Vandenbussche F, Jansen MAK 2019 A perspective on ecologically relevant plant-UV research and its practical application.Photochemical & Photobiological Science

2018

Dexter J, Dziga D , Lv J, Zhu J, Strzalka W, Maksylewicz A, Maroszek M, Marek S, Fu P 2018. Heterologous expression of mlrA in a photoautotrophic host – Engineering cyanobacteria to degrade microcystins. Environmental Pollution 237:926-935.

Kowalska E, Bartnicki F, Fujisawa R, Bonarek P, Hermanowicz P, Tsurimoto T, Muszyńska K, Strzalka W 2018. Inhibition of DNA replication by an anti-PCNA aptamer/PCNA complex . Nucleic Acid Research 46:25-41.

2017

Bartnicki F, Bonarek P, Kowalska E, Strzałka W 2017. The Argi-system: one step purificaztion of proteins tagged with arginine-rich cell-penetrating peptides. Scientific Reports 7, volume 2619

Banaś AK, Hermanowicz P, Sztatelman O, Łabuz J, Aggarwal Ch, Zgłobicki P, Jagiełło-Flasińska D, Strzałka W 2017. 6,4 - PP Photolyase Encoded by AtUVR3 is Localized in Nuclei, Chloroplasts and Mitochondria and Its Expression is Down-Regulated by Light in a Photosynthesis-Dependent Manner . Plant and Cell Physiology. pcx159, https://doi.org/10.1093/pcp/pcx159

Muszyńska K, Ostrowska D, Bartnicki F, Kowalska E, Bodaszewska-Lubaś M, Hermanowicz P, Faulstich H, Strzałka W 2017. Selection and analysis of a DNA aptamer binding α-amanitin from Amanita phalloides . Acta Biochimica Polonica 64:401-406.

Gabryś H, Banaś AK, Hermanowicz P, Krzeszowiec W, Leśniewski S, Łabuz J, Sztatelman O 2017. Photometric Assays for Chloroplast Movement Responses to Blue Light . Bio-protocol 7(11):e2310.

2016

Sztatelman O, Łabuz J, Hermanowicz P, Banaś AK, Bażant A, Zgłobicki P, Aggarwal Ch, Nadzieja M, Krzeszowiec W, Strzałka W, Gabryś H 2016. Fine tuning chloroplast movements through physical interactions between phototropins . Journal of Experimental Botany 67: 4963–4978.

Eckstein A, Jagiełło-Flasińska D, Lewandowska A, Hermanowicz P, Appenroth K-J, Gabryś H 2016. Mobilization of storage materials during light-induced germination of tomato (Solanum lycopersicum) seeds . Plant Physiology and Biochemistry 105: 271-281.

Eckstein A, Krzeszowiec W, Banaś AK, Janowiak F, Gabryś H 2016. Abscisic acid and blue light signaling pathways in chloroplast movements in Arabidopsis mesophyll . Acta Biochimica Polonica 63: doi: 10.18388/abp.2016_1382

Łabuz J, Samardakiewicz S, Hermanowicz P, Wyroba E, Pilarska M, Gabryś H 2016. Blue light-dependent changes in loosely bound calcium in Arabidopsis mesophyll cells: an X-ray microanalysis study. Journal of Experimental Botany 67: 3953-3964.

Dutilleul C, Ribeiro I, Blanc N, Nezames CD, Deng XW, Zgłobicki P, Palacio Barrera AM, Atehortua L, Courtois M, Labas V, Giglioli-Guivarc'h N, Ducos E 2016. ASG2 is a farnesylated DWD protein that acts as ABA negative regulator in Arabidopsis . Plant, Cell & Environment, 39: 185–198

Dziga D, Zielinska G, Władyka B, Bocheńska O, Maksylewicz A, Strzałka W, Meriluoto J 2016. Characterization of enzymatic activity of MlrB and MlrC proteins involved in bacterial degradation of cyanotoxins microcystins. Toxins, 8(3): 76.

2015

Eckstein A, Krzeszowiec W, Waligórski P, Gabryś H 2015. Auxin and chloroplast movements. Physiologia Plantarum 105: 271-281.

Gabruk M, Stecka A, Strzałka W, Kruk J, Strzałka K, Mysliwa-Kurdziel B 2015. Photoactive protochlorophyllide-enzyme complexes reconstituted with PORA, PORB and PORC proteins of A. thaliana: fluorescence and catalytic properties. PLoS One 10(2): e0116990. doi: 10.1371/journal.pone.0116990.

Bartnicki F, Kowalska E, Pels K, W. Strzalka W 2015. Imidazole-free purification of His3-tagged recombinant proteins using ssDNA aptamer-based affinity chromatography. Journal of Chromatography A 1418:130-9.

Sztatelman O, Grzyb J, Gabryś H, Banaś AK 2015. The effect of UV-B on Arabidopsis leaves depends on light conditions after treatment. BMC Plant Biology 15:281 doi:10.1186/s12870-015-0667-2.

Strzałka W, Aggarwal C, Krzeszowiec W, Jakubowska A, Sztatelman O, Banaś AK 2015 Arabidopsis PCNAs form complexes with selected D-type cyclins. Frontiers in Plant Science 6:516. doi: 10.3389/fpls.2015.00516

Łuczak M, Krzeszowiec-Jeleń W, Konopka-Postupolska D, Wojtaszek P 2015. Collagenase as a useful tool for the analysis of plant cellular peripheries. Phytochemistry 112: 195–209

Rydzewski J, Strzałka W, Nowak W 2015. Nanomechanics of PCNA: A protein-made DNA sliding clamp. Chemical Physics Letters 634:236–242

Łabuz J, Hermanowicz P, Gabryś H 2015. The impact of temperature on blue light induced chloroplast movements in Arabidopsis thaliana. Plant Science 239:238-49

Samardakiewicz S, Krzeszowiec-Jelen W, Bednarski W, Jankowski A, Suski S, Gabryś H, Woźny A 2015. Pb-Induced Avoidance-Like Chloroplast Movements in Fronds of Lemna trisulca L. PloS one: 10(2), e0116757-e0116757.

Sarna M, Wojcik KA, Hermanowicz P, Wnuk D, Burda K, Sanak M, Czyż J, Michalik M 2015. Undifferentiated Bronchial Fibroblasts Derived from Asthmatic Patents Display Higher Elastic Modulus than Their Non-Asthmatic Counterparts. PloS One 10(2) : e0116840. doi:10.1371/journal.pone.0116840.

2014

Aggarwal Ch, Banaś AK, Kasprowicz-Maluśki A, Borghetti C, Łabuz J, Dobrucki J, Gabryś H 2014. Blue-light-activated phototropin2 trafficking from the cytoplasm to Golgi/post-Golgi vesicles. Journal of Experimental Botany 66 (12): 3263–3276 doi: 10.1093/jxb/eru172.

Hermanowicz P, Sarna M, Burda K, Gabryś H 2014. AtomicJ: an open source software for analysis of force curves. Rev Sci Instrum (2014) 85(6): 063703, DOI: 10.1063/1.4881683.

Konieczny R, Banaś AK, Surówka E, Michalec Ż, Miszalski Z, Libik-Konieczny M 2014. Pattern of antioxidant enzyme activities and hydrogen peroxide content during developmental stages of rhizogenesis from hypocotyl explants of Mesembryanthemum crystallinum L. Plant Cell Rep. 33: 165-177.

Kowalska E, Bartnicki F, Pels K, Strzalka W 2014. The impact of immobilized metal affinity chromatography (IMAC) resins on DNA aptamer selection. Anal. Bioanal. Chem .406:5495–5499.

Sarna M, Zadlo A, Hermanowicz P, Madeja Z, Burda K, Sarna T 2014. Cell elasticity is an important indicator of the metastatic phenotype of melanoma cells. Exp. Dermatology 23: 813–818,

2013

Aggarwal Ch, Łabuz J, Gabryś H. 2013. Phosphoinositides play differential roles in regulating phototropin1- and phototropin2-mediated chloroplast movements in Arabidopsis. PlosOne, 8(2): e55393. doi:10.1371/journal.pone.0055393

Aggarwal Ch, Łabuz J, Gabryś H. 2013. Decoding the role of phosphoinositides in phototropin signaling involved in chloroplast movements. Plant Signaling & Behavior, 8(8): e25105

Strzałka W, Bartnicki F, Pels K, Jakubowska A, Tsurimoto T, Tanaka K. 2013. RAD5a ubiquitin ligase is involved in ubiquitination of Arabidopsis thaliana proliferating cell nuclear antygen. Journal of Experimental Botany, 64(4): 859-869

Strzałka W, Aggarwal Ch. 2013. Arabidopsis thaliana : Proliferating cell nuclear antigen 1 and 2 possibly form homo- and hetero-trimeric complexes in the plant cell. Plant Signaling & Behavior, 8(7): e 24837

2012

Rąpała-Kozik M, Wolak N, Kujda M, Banaś AK 2012. The upregulation of thiamine (vitamin B1) biosynthesis in Arabidopsis thaliana seedlings under salt and osmotic stress conditions is mediated by abscisic acid at the early stages of this stress response. BMC Plant Biology, 12:2

Łabuz J, Sztatelman O, Banaś AK, Gabryś H 2012. Expression of phototropins in Arabidopsis leaves: developmental and light regulation. Journal of Experimental Botany, 63: 1763–1771

Strzalka W, Labecki P, Bartnicki F, Aggarwal C, Rapala-Kozik M, Tani C, Tanaka K, Gabryś H 2012. Arabidopsis thaliana proliferating cell nuclear antigen has several potential sumoylation sites. Journal of Experimental Botany 2012, 63: 2971-83. doi: 10.1093/jxb/ers002

Gabryś H 2012. Blue-light-activated chloroplast movements: progress in the last decade. Progress in Botany, 73: 189-205, doi: 10.1007/978-3-642-22746-2_7

Banaś AK, Aggarwal C, Łabuz J, Sztatelman O, Gabryś H 2012. Blue light signalling in chloroplast movements. Journal of Experimental Botany 63:1559-1574.

2011

Appenroth K-J. Keresztes A, Krzysztofowicz E, Gabryś H 2011. Light-induced degradation of starch granules in turions of Spirodela polyrhiza studied by electron microscopy. Plant Cell Physiol 52, 384-391

Eckstein A, Zięba P, Gabryś H 2011. Sugar and light effects on the condition of the photosynthetic apparatus of Arabidopsis thaliana cultured in vitro. Journal of Plant Growth Regulation 31: 90-101.

Banaś AK, Łabuz J, Sztatelman O, Gabryś H, Fiedor L 2011. Expression of enzymes involved in chlorophyll catabolism in Arabidopsis is light-controlled. Plant Physiol, doi: 10.1104/pp.111.185504

Krzeszowiec W, Gabryś H. 2011. Intracellular movements: integration at the cellular level as reflected in the organization of organelle movements. In: Mechanical Integration of Plant Cells and Plants. Signaling and Communication in Plants, Editor: Wojtaszek P. 9, 91-116, DOI: 10.1007/978-3-642-19091-9_4, 2011, ISBN-10: 3642190901 | ISBN-13: 978-3642190902

Strzałka W, Ziemienowicz A 2011. Proliferating cell nuclear antigen (PCNA): a key factor in DNA replication and cell cycle regulation. Annals of Botany 107, 1127-1140

2010

Strzałka W, Kaczmarek A, Naganowska B, Ziemienowicz A 2010. Identification and functional analysis of PCNA1 and PCNA-like1 genes of Phaseolus coccineus. J Exp. Bot. 61: 873-888

Paris N, Saint-Jean B, Faraco M, Krzeszowiec W, Dalessandro G, Neuhaus J-M, Di Sansebastiano GP 2010. Expression of a glycosylated GFP as a bivalent reporter in exocytosis. Plant Cell Rep, 29:79-86

Sztatelman O, Waloszek A, Banaś AK, Gabryś H 2010. Photoprotective function of chloroplast avoidance movement: In vivo chlorophyll fluorescence study. J Plant Phys, 167: 709-716

Banaś AK, Krzeszowiec W, Dobrucki J, Gabryś H 2010. Mannose, but not glucose or sucrose, disturbs actin cytoskeleton in Arabidopsis thaliana leaves, Acta Phys Plant, 32: 773-779

Łabuz J, Krzeszowiec W, Gabryś H 2010. Threshold change in expression of GFP-FABD2 fusion protein during development of Arabidopsis thaliana leaves. Acta Biologica Cracoviensia Ser. Botanica, 52(2): 103-107